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余光创 教授

发布时间:2018-10-11

11383


      

基本信息:


 导师姓名: 余光创                              

 技术职称: 教授

 联系方式: gcyu1@smu.edu.cn

 研究方向:生物信息学  





个人简介:余光创,男,哲学博士,教授,博士生导师,2005年在华南农业大学获得理学学士学位,2009年在安徽医科大学获得理学硕士学位,2017年在香港大学获得哲学博士学位。20189月任南方医科大学基础医学院生物信息学系教授,20197月任生物信息学系副主任(主持全面工作)。主要通过整合多重组学数据并结合生物信息学相关技术,研究病毒进化特别是跨物种传播、肿瘤发生发展以及病毒与肿瘤的协同作用。同时也致力于开发生物信息学工具用于生物学数据的分析和可视化。以第一作者在Molecular Biology and Evolution, Methods in Ecology and EvolutionBioinformatcs等国际期刊发表多篇研究论文,所发表的论文中有5ESI高被引论文。


学术任职:

Bioinformatics, BMC Bioinformatics, Computational Biology and Chemistry, Current Bioinformatics, Gastroenterology Research and Practice, Molecular BioSystems, Nucleic Acids Research, R Journal等杂志审稿人



代表性论文/著作(包括教学、科研):

1. LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, CW Dunn, BR Jones, T Bradley, H Zhu, Y Guan, Y Jiang, G Yu*. treeio: an R package for phylogenetic tree input and output with richly annotated and associated data. Molecular Biology and Evolution. 2019, accepted. (IF: 14.797)

2. G Yu*, TTY Lam, H Zhu, Y Guan*. Two methods for mapping and visualizing associated data on phylogeny using ggtree. Molecular Biology and Evolution. 2018,35(12):3041-3043.(IF: 14.797)

3. G Yu. Using meshes for MeSH term enrichment and semantic analyses. Bioinformatics. 2018,34(21):3766-3767. (IF: 4.531)

4. G Yu, DK Smith, H Zhu, Y Guan, TTY Lam*. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution. 2017, 8(1):28-36. (IF: 7.099, ESI高被引论文,)

5. G Yu, QY He*. ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. Molecular BioSystems. 2016, 12(2):477-479. (IF: 2.855, ESI高被引论文)

6. G Yu*, LG Wang, QY He*. ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparision and visualization. Bioinformatics. 2015, 31(14):2382-2383. (IF: 4.531, ESI高被引论文)

7. G Yu*, LG Wang, GR Yan, QY He*. DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis. Bioinformatics. 2015, 31(4):608-609. (IF: 4.531)

8. X Sun, G Yu, Q Xu, N Li, C Xiao, X Yin, K Cao, J Han, QY He*. Putative cobalt- and nickel-binding proteins and motifs in Streptococcus pneumonia. Metallomics. 2013, 5(7):928-935.(IF: 3.571)

9. YY Zhu, G Yu, Y Zhang, Z Xu, YQ Huang, GR Yan*, QY He*. A novel andrographolide derivative AL-1 exerts its cytotoxicity on K562 cells through a ROS-dependent mechanism. Proteomics, 2013, 13(1):169-178. (IF: 3.106)

10. G Yu, LG Wang, Y Han, QY He*. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology. 2012, 16(5):284-287. (IF: 2.610, ESI高被引论文)

11. G Yu, CL Xiao, CH Lu, HT Jia, F Ge, W Wang, XF Yin, HL Jia, JX He*, QY He*. Phosphoproteome profile of human lung cancer cell line A549. Molecular BioSystems. 2011, 7(2):472-479. (IF: 2.855)

12. G Yu, F Li, Y Qin, X Bo*, Y Wu, S Wang*. GOSemSim: an R package for measuring semantic similarity among GO terms and gene products. Bioinformatics. 2010, 26(7):976-978. (IF: 4.531, ESI高被引论文)


主持课题(包括教学、科研):

序号

课题名称

项目来源

资助金额

起止年份

1

南方医科大学第三层次人才引进科研项目


南方医科大学

150

2018-2019